The server will send back the result the XML format requested by the user.
If the m (mode) parameter is set to json, FoldIndex© will send back the results in JSON format.
If the m (mode) parameter is set to xml, FoldIndex© will send back the results in XML format (DTD, sample XML).
You may use either a UniProt or PDB id instead of a sequence for a direct Cross-Reference to FoldIndex. These examples demonstrate how to indicate the sequence to work on. You may combine this with any of the other options (ie: xml output, window size):
sequence of chain B from PDB entry 2JBH https://fold.proteopedia.org/cgi-bin/findex?sq=pdb:2jbh_b sequence from UniProt P77990 https://fold.proteopedia.org/cgi-bin/findex?sq=uniprot:P77990
It's a dynamic and interactive process that estimates the local and general probability
for the provided sequence, under specified conditions, to fold.
Built from ideas by Jaime Prilusky, Tzviya Zeev-Ben-Mordehai, Edwin Rydberg, Clifford Felder, Israel Silman and Joel L. Sussman, based on algorithm proposed by Uversky VN, Gillespie JR, and Fink AL. Why are "natively unfolded" proteins unstructured under physiologic conditions? Proteins 2000; 41:415-427.